<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3.dtd">
<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">najo</journal-id><journal-title-group><journal-title xml:lang="en">Nanosystems: Physics, Chemistry, Mathematics</journal-title><trans-title-group xml:lang="ru"><trans-title>Наносистемы: физика, химия, математика</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2220-8054</issn><issn pub-type="epub">2305-7971</issn><publisher><publisher-name>Университет ИТМО</publisher-name></publisher></journal-meta><article-meta><article-id custom-type="elpub" pub-id-type="custom">najo-1201</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>PHYSICS</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ФИЗИКА</subject></subj-group></article-categories><title-group><article-title>Interaction of terahertz radiation with DNA</article-title><trans-title-group xml:lang="ru"><trans-title></trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="western" xml:lang="en"><surname>Bugay</surname><given-names>A. N.</given-names></name></name-alternatives><bio xml:lang="en"><p>Aleksandr Bugay – Ph.D., researcher</p></bio><email xlink:type="simple">bugay_aleksandr@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff xml:lang="en" id="aff-1"><institution>Joint Institute for Nuclear Research</institution><country>Russian Federation</country></aff><pub-date pub-type="collection"><year>2012</year></pub-date><pub-date pub-type="epub"><day>20</day><month>08</month><year>2025</year></pub-date><volume>3</volume><issue>1</issue><fpage>51</fpage><lpage>55</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Bugay A.N., 2025</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="ru">Bugay A.N.</copyright-holder><copyright-holder xml:lang="en">Bugay A.N.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://nanojournal.ifmo.ru/jour/article/view/1201">https://nanojournal.ifmo.ru/jour/article/view/1201</self-uri><abstract><p>A nonlinear model of DNA dynamics with coupling between conformational dynamics and proton tunneling is presented. It is demonstrated that terahertz radiation can influence both vibrational excitations and proton motion in DNA hydrogen bonds. The irradiation at the edge of far IR spectral range can promote proton tunneling. If the radiation frequency matches the vibrational mode, the generation of localized excitations in form of dissipative solitons is possible. These solitons decrease the probability of proton tunneling.</p></abstract><kwd-group xml:lang="en"><kwd>DNA</kwd><kwd>terahertz radiation</kwd><kwd>proton tunneling</kwd><kwd>dissipative soliton</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Kumar S., Li M.S. Biomolecules under mechanical force // Physics Reports. — 2010. — 486. — 1-74.</mixed-citation><mixed-citation xml:lang="en">Kumar S., Li M.S. Biomolecules under mechanical force // Physics Reports. — 2010. — 486. — 1-74.</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Knotts T.A., Ratore N., Shwartz D.C., de Pable J.J. A coarse grain model for DNA // The Journal of Chemical Physics. — 2007. — 126. — 084901.</mixed-citation><mixed-citation xml:lang="en">Knotts T.A., Ratore N., Shwartz D.C., de Pable J.J. A coarse grain model for DNA // The Journal of Chemical Physics. — 2007. — 126. — 084901.</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Yakushevich L.V. Nonlinear Physics of DNA. — Wiley-VCH, 2004.</mixed-citation><mixed-citation xml:lang="en">Yakushevich L.V. Nonlinear Physics of DNA. — Wiley-VCH, 2004.</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Niemeyer C.M., Mirkin C.A. (Eds.). Nanobiotechnology. Concepts, Applications and Perspectives. — Wiley-VCH, 2004.</mixed-citation><mixed-citation xml:lang="en">Niemeyer C.M., Mirkin C.A. (Eds.). Nanobiotechnology. Concepts, Applications and Perspectives. — Wiley-VCH, 2004.</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Wagenknecht H.-A. (Ed.) Charge Transfer in DNA. From Mechanism to Application. — Wiley-VCH, 2004.</mixed-citation><mixed-citation xml:lang="en">Wagenknecht H.-A. (Ed.) Charge Transfer in DNA. From Mechanism to Application. — Wiley-VCH, 2004.</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">L¨owdin P.-O. Proton tunneling in DNA and its biological implications // Reviews of Modern Physics. — 1963. — 35(3). — 724-732.</mixed-citation><mixed-citation xml:lang="en">L¨owdin P.-O. Proton tunneling in DNA and its biological implications // Reviews of Modern Physics. — 1963. — 35(3). — 724-732.</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Grebneva H.A. A Model for Targeted Substitution Mutagenesis During SOS Replication of Double-Stranded DNA Containing cis-syn Cyclobutane Thymine Dimers // Environmental and Molecular Mutagenesis. — 2006. — 47. — 733-745.</mixed-citation><mixed-citation xml:lang="en">Grebneva H.A. A Model for Targeted Substitution Mutagenesis During SOS Replication of Double-Stranded DNA Containing cis-syn Cyclobutane Thymine Dimers // Environmental and Molecular Mutagenesis. — 2006. — 47. — 733-745.</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Tolpygo K.B, Grebneva H.A. Effect of the state of h-b-1 hydrogen bond of the character of some atom vibrations in guaninecytosine pair of the DNA molecule. // Int J Quantum Chem. — 1996. — 57. — 219-227.</mixed-citation><mixed-citation xml:lang="en">Tolpygo K.B, Grebneva H.A. Effect of the state of h-b-1 hydrogen bond of the character of some atom vibrations in guaninecytosine pair of the DNA molecule. // Int J Quantum Chem. — 1996. — 57. — 219-227.</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Villani G. A time-dependent quantum dynamics investigation of the guanine-cytosine system: A six-dimensional model // The Journal of Chemical Physics. — 2008. — 128. — 114306.</mixed-citation><mixed-citation xml:lang="en">Villani G. A time-dependent quantum dynamics investigation of the guanine-cytosine system: A six-dimensional model // The Journal of Chemical Physics. — 2008. — 128. — 114306.</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Fedorov V.I. et al. Study of biological effects of electromagnetic radiation of submillimeter part of terahertz range. // Biomeditsiknskaya Radioelektronika, 2011.</mixed-citation><mixed-citation xml:lang="en">Fedorov V.I. et al. Study of biological effects of electromagnetic radiation of submillimeter part of terahertz range. // Biomeditsiknskaya Radioelektronika, 2011.</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Fedorov V.I. et al. Comparative study of the effects of infrared, submillimeter, and millimeter EM radiation //Biophysics. — 2001. — 46(2). — 293-297.</mixed-citation><mixed-citation xml:lang="en">Fedorov V.I. et al. Comparative study of the effects of infrared, submillimeter, and millimeter EM radiation //Biophysics. — 2001. — 46(2). — 293-297.</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Alexandrov B.S., et al. DNA breathing dynamics in the presence of a terahertz field // Physics Letters A, 2010. — 374(10). — 12141217.</mixed-citation><mixed-citation xml:lang="en">Alexandrov B.S., et al. DNA breathing dynamics in the presence of a terahertz field // Physics Letters A, 2010. — 374(10). — 12141217.</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">R. Blinc and B. Zeks, Soft Modes in Ferroelectrics and Antiferroelectrics. — Amsterdam: North-Holland, 1975.</mixed-citation><mixed-citation xml:lang="en">R. Blinc and B. Zeks, Soft Modes in Ferroelectrics and Antiferroelectrics. — Amsterdam: North-Holland, 1975.</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Dauxois T., Peyrard M., Bishop A.R. Entropy-driven DNA denaturation // Phys. Rev. E. — 1993. — 47. — R44.</mixed-citation><mixed-citation xml:lang="en">Dauxois T., Peyrard M., Bishop A.R. Entropy-driven DNA denaturation // Phys. Rev. E. — 1993. — 47. — R44.</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Sazonov S.V., Electromagnetic videosolitons and breathers in the KDP-type ferroelectric // Physics of the Solid State. — 1995. — 37(6). — 1612-1622.</mixed-citation><mixed-citation xml:lang="en">Sazonov S.V., Electromagnetic videosolitons and breathers in the KDP-type ferroelectric // Physics of the Solid State. — 1995. — 37(6). — 1612-1622.</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Belonenko M.B., Nazarenko S.V. Microscopic theory of the electro-acoustic echo in order-disorder antiferro-electrics // Physics of the Solid State. — 1998. — 40(1). — 105-108.</mixed-citation><mixed-citation xml:lang="en">Belonenko M.B., Nazarenko S.V. Microscopic theory of the electro-acoustic echo in order-disorder antiferro-electrics // Physics of the Solid State. — 1998. — 40(1). — 105-108.</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Gronbech-Jensen N., Kivshar Yu. S., Samuelsen M.R. Stabilization of breathers in parametrically driven sine Gordon system// Phys. Rev. B. — 1991. — 43(7). — 5698.</mixed-citation><mixed-citation xml:lang="en">Gronbech-Jensen N., Kivshar Yu. S., Samuelsen M.R. Stabilization of breathers in parametrically driven sine Gordon system// Phys. Rev. B. — 1991. — 43(7). — 5698.</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Barashenkov I.V., Zemlyanaya E.V. Stable Complexes of Parametrically Driven, Damped Nonlinear Schr¨odinger Solitons// Phys. Rev. Lett. — 1999. — 83. — 25682571.</mixed-citation><mixed-citation xml:lang="en">Barashenkov I.V., Zemlyanaya E.V. Stable Complexes of Parametrically Driven, Damped Nonlinear Schr¨odinger Solitons// Phys. Rev. Lett. — 1999. — 83. — 25682571.</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Bock J., et al. Mammalian stem cells reporgramming in response to Terahertz Radiation // PLoS Biol, 2010. — 5(12). — e15806.</mixed-citation><mixed-citation xml:lang="en">Bock J., et al. Mammalian stem cells reporgramming in response to Terahertz Radiation // PLoS Biol, 2010. — 5(12). — e15806.</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Ratushnyak A.S. et al. Influence of submillimeter range electromagnetic radiation on neuron systems // The Third International Symposium on Modern Problems of Laser Physics, Novosibirsk, 2000. — 177.</mixed-citation><mixed-citation xml:lang="en">Ratushnyak A.S. et al. Influence of submillimeter range electromagnetic radiation on neuron systems // The Third International Symposium on Modern Problems of Laser Physics, Novosibirsk, 2000. — 177.</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
