<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3.dtd">
<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">najo</journal-id><journal-title-group><journal-title xml:lang="en">Nanosystems: Physics, Chemistry, Mathematics</journal-title><trans-title-group xml:lang="ru"><trans-title>Наносистемы: физика, химия, математика</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2220-8054</issn><issn pub-type="epub">2305-7971</issn><publisher><publisher-name>Университет ИТМО</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.17586/22208054201785586595</article-id><article-id custom-type="elpub" pub-id-type="custom">najo-612</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>PHYSICS</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ФИЗИКА</subject></subj-group></article-categories><title-group><article-title>Truncated minimum energy path method for finding first order saddle points</article-title><trans-title-group xml:lang="ru"><trans-title></trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="western" xml:lang="en"><surname>Lobanov</surname><given-names>I. S.</given-names></name></name-alternatives><bio xml:lang="en"><p>Kronverkskiy, 49, St. Petersburg, 197101</p></bio><email xlink:type="simple">lobanov.igor@gmail.com</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="western" xml:lang="en"><surname>Potkina</surname><given-names>M. N.</given-names></name></name-alternatives><bio xml:lang="en"><p>Kronverkskiy, 49, St. Petersburg, 197101</p><p>107 Reykjav´ık</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="western" xml:lang="en"><surname>J´onsson</surname><given-names>H. H.</given-names></name></name-alternatives><bio xml:lang="en"><p>107 Reykjav´ık</p><p>Los Alamos, NM 87545</p></bio><email xlink:type="simple">hj@hi.is</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="western" xml:lang="en"><surname>Uzdin</surname><given-names>V. M.</given-names></name></name-alternatives><bio xml:lang="en"><p>Kronverkskiy, 49, St. Petersburg, 197101</p><p>St. Petersburg, 198504</p></bio><email xlink:type="simple">v_uzdin@mail.ru</email><xref ref-type="aff" rid="aff-4"/></contrib></contrib-group><aff xml:lang="en" id="aff-1"><institution>ITMO University</institution><country>Russian Federation</country></aff><aff xml:lang="en" id="aff-2"><institution>St. Petersburg State University; Science Institute and Faculty of Physical Sciences, University of Iceland</institution><country>Russian Federation</country></aff><aff xml:lang="en" id="aff-3"><institution>Science Institute and Faculty of Physical Sciences, University of Iceland; Center for Nonlinear Studies</institution><country>Iceland</country></aff><aff xml:lang="en" id="aff-4"><institution>ITMO University; St. Petersburg State University</institution><country>Russian Federation</country></aff><pub-date pub-type="collection"><year>2017</year></pub-date><pub-date pub-type="epub"><day>12</day><month>08</month><year>2025</year></pub-date><volume>8</volume><issue>5</issue><elocation-id>586–595</elocation-id><permissions><copyright-statement>Copyright &amp;#x00A9; Lobanov I.S., Potkina M.N., J´onsson H.H., Uzdin V.M., 2025</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="ru">Lobanov I.S., Potkina M.N., J´onsson H.H., Uzdin V.M.</copyright-holder><copyright-holder xml:lang="en">Lobanov I.S., Potkina M.N., J´onsson H.H., Uzdin V.M.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://nanojournal.ifmo.ru/jour/article/view/612">https://nanojournal.ifmo.ru/jour/article/view/612</self-uri><abstract><p>A method for finding a selected region of the minimum energy path between two local minima on an energy surface is presented. It can be used to find the highest saddle point and thereby estimate the activation energy for the corresponding transition when the shape of the path is known reasonably well and a good guess can be made of the approximate location of the saddle point. The computational effort is then reduced significantly as compared with a calculation of the full minimum energy path by focusing the images on the selected part of the path and making one of the images, the climbing image, converge rigorously on the saddle point. Unlike the commonly used implementation where a restraint is used to distribute the images along the path, the present implementation makes use of a constraint where the distance between images is controlled based on a predefined overall length of the path. A relatively even density of images on each side of the climbing image is maintained by allowing images to move from one side to the other. Applications to magnetic skyrmion annihilation and escape through boundary are used to illustrate the savings in computational effort as compared with full minimum energy path calculations.</p></abstract><kwd-group xml:lang="en"><kwd>saddle point</kwd><kwd>minimum energy path</kwd><kwd>constraint</kwd><kwd>rate theory</kwd><kwd>skyrmion</kwd></kwd-group><funding-group><funding-statement xml:lang="en">This work was supported by the Government of the Russian Federation (grant 074U01) and by grant 161110330 of Russian Science Foundation.</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Mills G., J´onsson H., Schenter G.K. Reversible work based transition state theory: Application to H2 dissociative adsorption. Surf. Sci., 1995, 324, P. 305–337.</mixed-citation><mixed-citation xml:lang="en">Mills G., J´onsson H., Schenter G.K. Reversible work based transition state theory: Application to H2 dissociative adsorption. Surf. Sci., 1995, 324, P. 305–337.</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">J´onsson H., Mills G., Jacobsen K.W., edited by Berne B.J., Ciccotti G., Coker D.F. Nudged elastic band method for finding minimum energy paths of transitions, in Classical and Quantum Dynamics in Condensed Phase Simulations. World Scientific, Singapore, 1998, P. 385–404.</mixed-citation><mixed-citation xml:lang="en">J´onsson H., Mills G., Jacobsen K.W., edited by Berne B.J., Ciccotti G., Coker D.F. Nudged elastic band method for finding minimum energy paths of transitions, in Classical and Quantum Dynamics in Condensed Phase Simulations. World Scientific, Singapore, 1998, P. 385–404.</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Henkelman G., Arnaldsson A., J´onsson H. Theoretical calculations of CH4 and H2 associative desorption from Ni(111): Could subsurface hydrogen play an important role? J. Chem. Phys., 2006, 124, P. 044706(9).</mixed-citation><mixed-citation xml:lang="en">Henkelman G., Arnaldsson A., J´onsson H. Theoretical calculations of CH4 and H2 associative desorption from Ni(111): Could subsurface hydrogen play an important role? J. Chem. Phys., 2006, 124, P. 044706(9).</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Henkelman G., J´onsson H. A dimer method for finding saddle points on high dimensional potential surfaces using only first derivatives. J. Chem. Phys., 1999, 111(15), P. 7010–7022.</mixed-citation><mixed-citation xml:lang="en">Henkelman G., J´onsson H. A dimer method for finding saddle points on high dimensional potential surfaces using only first derivatives. J. Chem. Phys., 1999, 111(15), P. 7010–7022.</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Olsen R.A., Kroes G.J., Henkelman G., Arnaldsson A., J´onsson H. Comparison of methods for finding saddle points without knowledge of the final states. J. Chem. Phys., 2004, 121(20), P. 9776–9792.</mixed-citation><mixed-citation xml:lang="en">Olsen R.A., Kroes G.J., Henkelman G., Arnaldsson A., J´onsson H. Comparison of methods for finding saddle points without knowledge of the final states. J. Chem. Phys., 2004, 121(20), P. 9776–9792.</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Guti´errez M.P., Arg´aez C., J´onsson H. Improved minimum mode following method for finding first order saddle points. J. Chem. Theo. Comput., 2017, 13(1), P. 125–134.</mixed-citation><mixed-citation xml:lang="en">Guti´errez M.P., Arg´aez C., J´onsson H. Improved minimum mode following method for finding first order saddle points. J. Chem. Theo. Comput., 2017, 13(1), P. 125–134.</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Henkelman G., J´ohannesson G., J´onsson H. Methods for finding saddle points and minimum energy paths. in Theoretical Methods in Condensed Phase Chemistry, 2002, P. 269–302.</mixed-citation><mixed-citation xml:lang="en">Henkelman G., J´ohannesson G., J´onsson H. Methods for finding saddle points and minimum energy paths. in Theoretical Methods in Condensed Phase Chemistry, 2002, P. 269–302.</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Henkelman G., Uberuaga B.P., J´onsson H. A climbing image nudged elastic band method for finding saddle points and minimum energy paths. J. Chem. Phys., 2000, 113(22), P. 9901–9904.</mixed-citation><mixed-citation xml:lang="en">Henkelman G., Uberuaga B.P., J´onsson H. A climbing image nudged elastic band method for finding saddle points and minimum energy paths. J. Chem. Phys., 2000, 113(22), P. 9901–9904.</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Maragakis P., Andreev S.A., Brumer Y., Reichman D.R., Kaxiras E. Adaptive nudged elastic band approach for transition state calculation. J. Chem. Phys. 2002, 117, P. 4651–4658.</mixed-citation><mixed-citation xml:lang="en">Maragakis P., Andreev S.A., Brumer Y., Reichman D.R., Kaxiras E. Adaptive nudged elastic band approach for transition state calculation. J. Chem. Phys. 2002, 117, P. 4651–4658.</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Zhu T., Li J., Samanta A., Kim H.G., Suresh S. Interfacial plasticity governs strain rate sensitivity and ductility in nanostructured metals. PNAS, 2007, 104 (9), P. 3031–3036.</mixed-citation><mixed-citation xml:lang="en">Zhu T., Li J., Samanta A., Kim H.G., Suresh S. Interfacial plasticity governs strain rate sensitivity and ductility in nanostructured metals. PNAS, 2007, 104 (9), P. 3031–3036.</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Einarsdo´ttir D.M., Arnaldsson A., O´ skarsson F. and Jo´nsson H. Path optimization with application to tunneling. Lecture Notes in Computer Science, 2012, 7134, P. 45–55.</mixed-citation><mixed-citation xml:lang="en">Einarsdo´ttir D.M., Arnaldsson A., O´ skarsson F. and Jo´nsson H. Path optimization with application to tunneling. Lecture Notes in Computer Science, 2012, 7134, P. 45–55.</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Henkelman G., J´onsson H. Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points. J. Chem. Phys., 2000, 113(22), P. 9978–9985.</mixed-citation><mixed-citation xml:lang="en">Henkelman G., J´onsson H. Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points. J. Chem. Phys., 2000, 113(22), P. 9978–9985.</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Weinan E., Weiqing R., VandenEijnden E. String method for the study of rare events. Phys. Rev. B, 2002, 66, P. 052301(4).</mixed-citation><mixed-citation xml:lang="en">Weinan E., Weiqing R., VandenEijnden E. String method for the study of rare events. Phys. Rev. B, 2002, 66, P. 052301(4).</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Ravishenker, et al. Reviews in Computational Chemistry, Volume 11, edited by Kenny B. Lipkowitz, Donald B. Boyd, John Wiley &amp; Sons, Sep 22, 2009, chapter 6, P. 346–347.</mixed-citation><mixed-citation xml:lang="en">Ravishenker, et al. Reviews in Computational Chemistry, Volume 11, edited by Kenny B. Lipkowitz, Donald B. Boyd, John Wiley &amp; Sons, Sep 22, 2009, chapter 6, P. 346–347.</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Sheppard D., Terrell R., Henkelman G. Optimization methods for finding minimum energy paths. J. Chem. Phys., 2008, 128, P. 134106(10).</mixed-citation><mixed-citation xml:lang="en">Sheppard D., Terrell R., Henkelman G. Optimization methods for finding minimum energy paths. J. Chem. Phys., 2008, 128, P. 134106(10).</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Bessarab P.F., Uzdin V.M. J´onsson H. Method for finding mechanism and activation energy of magnetic transitions, applied to skyrmion and antivortex annihilation. Comp. Phys. Commun., 2015, 196, P. 335–347.</mixed-citation><mixed-citation xml:lang="en">Bessarab P.F., Uzdin V.M. J´onsson H. Method for finding mechanism and activation energy of magnetic transitions, applied to skyrmion and antivortex annihilation. Comp. Phys. Commun., 2015, 196, P. 335–347.</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Bessarab P.F. Comment on “Path to collapse for an isolated N´eel skyrmion”. Phys. Rev. B , 2017, 95(13), P. 136401(2).</mixed-citation><mixed-citation xml:lang="en">Bessarab P.F. Comment on “Path to collapse for an isolated N´eel skyrmion”. Phys. Rev. B , 2017, 95(13), P. 136401(2).</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Malottki S.V., Dup´e B., Bessarab P.F., Delin A., Heinze S. Enhanced skyrmion stability due to exchange frustration. Sci. Rep., 2017, 7, P. 12299(10).</mixed-citation><mixed-citation xml:lang="en">Malottki S.V., Dup´e B., Bessarab P.F., Delin A., Heinze S. Enhanced skyrmion stability due to exchange frustration. Sci. Rep., 2017, 7, P. 12299(10).</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
